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Solution structure of the N-terminal zinc fingers of the xenopus laevis double stranded RNA binding protein zfa

Analyse Solution structure of the N-terminal zinc fingers of the xenopus laevis double… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZU1
Type: protein
Length: 127 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA binding protein zfa
UniProt: Q8AVN9
Ligands: ZN
Pockets: 1 · best druggability 0.33

Structure

solution nmr · 1 distinct chain · 40% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA binding protein zfa	protein	127	40% helix, 7% strand	Q8AVN9

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.33	0.76	13	empty

Compared structures

1ZU1 · Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded… · the same entry in another collection · chain A against A, TM-score 1.00
Q8AVN9 · AlphaFold monomer V2.0 prediction for zinc finger protein 346 (Q8AVN9) · a predicted model of the same protein · chain A against A, TM-score 0.51

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8AVN9
Elsewhere: RCSB PDB 1ZU1 · PDBe 1ZU1 · UniProt Q8AVN9

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