Research workbench
Crystal structure of a computationally designed sspb heterodimer
Analyse Crystal structure of a computationally designed sspb heterodimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZSZ
- Type
- protein
- Length
- 321 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Stringent starvation protein B homolog
- UniProt
- P45206
- Ligands
- MG
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 3 distinct chains · 22% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Stringent starvation protein B homolog | protein | 106 | 22% helix, 41% strand | P45206 |
| B | Stringent starvation protein B homolog | protein | 106 | 22% helix, 41% strand | P45206 |
| C | Stringent starvation protein B homolog | protein | 109 | 24% helix, 39% strand | P45206 |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.33 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- B–C · 681 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 1ZSZ · Crystal structure of a computationally designed SspB heterodimer · the same entry in another collection · chain A against A, TM-score 1.00
- P45206 · AlphaFold monomer V2.0 prediction for stringent starvation protein B homolog (P45206) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P45206
- Elsewhere: RCSB PDB 1ZSZ · PDBe 1ZSZ · UniProt P45206
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.