Research workbench
Hypothetical protein from plasmodium falciparum
Analyse Hypothetical protein from plasmodium falciparum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZSO
- Type
- protein
- Length
- 315 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- Q8IDI8
- Pockets
- 5 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 2% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 156 | 2% helix, 56% strand | Q8IDI8 |
| B | Hypothetical protein | protein | 159 | 2% helix, 57% strand | Q8IDI8 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 129 | 0.80 | 0.97 | 27 | empty |
| 2 | 106 | 0.40 | 0.76 | 24 | empty |
| 3 | 90 | 0.36 | 0.75 | 21 | empty |
| 4 | 70 | 0.33 | 0.76 | 14 | empty |
| 5 | 69 | 0.31 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 954 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 1ZSO · Hypothetical protein from plasmodium falciparum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IDI8
- Elsewhere: RCSB PDB 1ZSO · PDBe 1ZSO · UniProt Q8IDI8
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