Research workbench
Structure of bacteriophage lambda cii protein
Analyse Structure of bacteriophage lambda cii protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZPQ
- Type
- protein
- Length
- 305 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulatory protein cii
- UniProt
- P03042
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 4 distinct chains · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulatory protein cii | protein | 74 | 74% helix, 0% strand | P03042 |
| B | Regulatory protein cii | protein | 75 | 72% helix, 0% strand | P03042 |
| C | Regulatory protein cii | protein | 78 | 72% helix, 0% strand | P03042 |
| D | Regulatory protein cii | protein | 78 | 60% helix, 0% strand | P03042 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 414 | 0.65 | 0.78 | 43 | empty |
| 2 | 58 | 0.33 | 0.76 | 13 | empty |
Interfaces
6 interfaces between chains.
- A–B · 1444 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 1435 Ų buried · 4 hydrogen bonds · protein-protein
- B–C · 459 Ų buried · 6 hydrogen bonds · protein-protein
- A–C · 254 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 190 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 1ZPQ · STRUCTURE OF BACTERIOPHAGE LAMBDA CII protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03042
- Elsewhere: RCSB PDB 1ZPQ · PDBe 1ZPQ · UniProt P03042
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