Research workbench
The P-site and P/E-site tRNA structures fitted to P/I site codon.
Analyse The P-site and P/E-site tRNA structures fitted to P/I site codon. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZO3
- Type
- RNA
- Length
- 152 nucleotides
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA
- Pockets
- 6 · best druggability 0.64
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | TRNA | rna | 76 | — | — |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 486 | 0.64 | 0.78 | 31 | empty |
| 2 | 289 | 0.62 | 0.81 | 23 | empty |
| 3 | 596 | 0.62 | 0.75 | 32 | empty |
| 4 | 473 | 0.60 | 0.76 | 23 | empty |
| 5 | 96 | 0.30 | 0.72 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 1023 Ų buried · 311 hydrogen bonds · nucleic-nucleic
Compared structures
- 1ZO3 · The P-site and P/E-site tRNA structures fitted to P/I site codon. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1ZO3 · PDBe 1ZO3
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