Research workbench
X-ray crystal structure of protein Q8U9W0 from agrobacterium tumefaciens. northeast structural genomics consortium target ATR55.
Analyse X-ray crystal structure of protein Q8U9W0 from agrobacterium tumefaciens.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZNP
- Type
- protein
- Length
- 975 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein ATU3615
- UniProt
- Q8U9W0
- Pockets
- 7 · best druggability 0.63
Structure
x-ray diffraction · 4 distinct chains · 9% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein ATU3615 | protein | 140 | 8% helix, 46% strand | Q8U9W0 |
| B, F, G | Hypothetical protein ATU3615 | protein | 140 | 8% helix, 46% strand | Q8U9W0 |
| C, D | Hypothetical protein ATU3615 | protein | 138 | 9% helix, 46% strand | Q8U9W0 |
| E | Hypothetical protein ATU3615 | protein | 139 | 10% helix, 45% strand | Q8U9W0 |
Pockets
7 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.63 | 0.92 | 21 | empty |
| 2 | 50 | 0.63 | 0.94 | 19 | empty |
| 3 | 55 | 0.62 | 0.92 | 21 | empty |
| 4 | 272 | 0.60 | 0.79 | 39 | empty |
| 5 | 57 | 0.59 | 0.90 | 17 | empty |
Interfaces
4 interfaces between chains.
- B–C · 1378 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 483 Ų buried · 3 hydrogen bonds · protein-protein
- A–C · 331 Ų buried · 6 hydrogen bonds · protein-protein
- D–G · 281 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 1ZNP · X-Ray Crystal Structure of Protein Q8U9W0 from Agrobacterium tumefaciens. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U9W0
- Elsewhere: RCSB PDB 1ZNP · PDBe 1ZNP · UniProt Q8U9W0
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