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Nf-kb relb forms an intertwined homodimer

Analyse Nf-kb relb forms an intertwined homodimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZK9
Type: protein
Length: 110 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transcription factor relb
UniProt: Q04863
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transcription factor relb	protein	110	3% helix, 30% strand	Q04863

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	380	0.61	0.77	40	empty

Compared structures

1ZK9 · NF-kB RelB forms an intertwined homodimer · the same entry in another collection · chain A against A, TM-score 1.00
Q04863 · AlphaFold monomer V2.0 prediction for transcription factor relb (Q04863) · a predicted model of the same protein · chain A against A, TM-score 0.50

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04863
Elsewhere: RCSB PDB 1ZK9 · PDBe 1ZK9 · UniProt Q04863

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