Research workbench
Aminopeptidase S from S. aureus
Analyse Aminopeptidase S from S. aureus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZJC
- Type
- protein
- Length
- 413 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Aminopeptidase amps
- EC
- 3.4.11.-
- UniProt
- Q8NVU1
- Ligands
- CO
- Pockets
- 3 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Aminopeptidase amps (EC 3.4.11.-) | protein | 413 | 38% helix, 27% strand | Q8NVU1 |
Ligands and binding sites
- CO · Cobalt (II) ion · metal · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1196 | 0.83 | 0.84 | 77 | CO |
| 2 | 52 | 0.32 | 0.77 | 14 | empty |
| 3 | 50 | 0.29 | 0.76 | 16 | empty |
Compared structures
- 1ZJC · Aminopeptidase S from S. aureus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NVU1
- Elsewhere: RCSB PDB 1ZJC · PDBe 1ZJC · UniProt Q8NVU1
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