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Crystal structure of the parkia platycephala seed lectin

Analyse Crystal structure of the parkia platycephala seed lectin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZGR
Type: protein
Length: 882 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MANNOSE/GLUCOSE-specific lectin
UniProt: P83304
Pockets: 5 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 64% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	MANNOSE/GLUCOSE-specific lectin	protein	441	0% helix, 64% strand	P83304

Pockets

5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	419	0.71	0.82	45	empty
2	513	0.66	0.77	51	empty
3	479	0.65	0.77	52	empty
4	135	0.53	0.81	24	empty
5	110	0.48	0.80	20	empty

Interfaces

1 interface between chains.

A–B · 1384 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

1ZGR · Crystal structure of the Parkia platycephala seed lectin · the same entry in another collection · chain A against A, TM-score 1.00
P83304 · AlphaFold monomer V2.0 prediction for MANNOSE/GLUCOSE-specific lectin (P83304) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P83304
Elsewhere: RCSB PDB 1ZGR · PDBe 1ZGR · UniProt P83304

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