Research workbench
Crystal structure of human ppar-gamma ligand binding domain complexed with an alpha-aryloxyphenylacetic acid agonist
Analyse Crystal structure of human ppar-gamma ligand binding domain complexed with an… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZEO
- Type
- protein
- Length
- 510 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peroxisome proliferator activated receptor gamma
- UniProt
- P37231
- Ligands
- C01
- Pockets
- 7 · best druggability 0.85
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peroxisome proliferator activated receptor gamma | protein | 263 | 68% helix, 5% strand | P37231 |
| B | Peroxisome proliferator activated receptor gamma | protein | 247 | 66% helix, 4% strand | P37231 |
Ligands and binding sites
- C01 · (2S)-(4-isopropylphenyl)[(2-methyl-3-oxo-5,7-dipropyl-2,3-dihydro-1,2-benzisoxazol-6-yl)oxy]acetate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 484 | 0.85 | 0.92 | 48 | C01 |
| 2 | 459 | 0.72 | 0.81 | 65 | empty |
| 3 | 324 | 0.60 | 0.78 | 30 | empty |
| 4 | 78 | 0.57 | 0.88 | 15 | empty |
| 5 | 171 | 0.47 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1071 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 1ZEO · Crystal Structure of Human PPAR-gamma Ligand Binding Domain Complexed with an… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37231
- Elsewhere: RCSB PDB 1ZEO · PDBe 1ZEO · UniProt P37231
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.