Research workbench
Coordinates of tmrna, smpb, ef-tu and H44 fitted into cryo-EM MAP of the 70S ribosome and tmrna complex
Analyse Coordinates of tmrna, smpb, ef-tu and H44 fitted into cryo-EM MAP of the 70S… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZC8
- Type
- protein
- Length
- 535 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ssra-binding protein; Elongation factor tu
- Pockets
- 3 · best druggability 0.48
Structure
electron microscopy · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| K | Ssra-binding protein | protein | 130 | 0% helix, 0% strand | — |
| Y | Elongation factor tu | protein | 405 | 0% helix, 0% strand | — |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 215 | 0.48 | 0.72 | 46 | empty |
| 2 | 170 | 0.45 | 0.73 | 45 | empty |
| 3 | 151 | 0.42 | 0.72 | 43 | empty |
Compared structures
- 1ZC8 · Coordinates of tmRNA, SmpB, EF-Tu and h44 fitted into Cryo-EM map of the 70S ribosome and… · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1ZC8 · PDBe 1ZC8
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