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X-ray crystal structure of protein VPA1032 from vibrio parahaemolyticus. northeast structural genomics consortium target VPR44
Analyse X-ray crystal structure of protein VPA1032 from vibrio parahaemolyticus.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZBP
- Type
- protein
- Length
- 266 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein VPA1032
- UniProt
- Q87HD3
- Pockets
- 3 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein VPA1032 | protein | 266 | 42% helix, 25% strand | Q87HD3 |
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.56 | 0.81 | 32 | empty |
| 2 | 102 | 0.52 | 0.83 | 28 | empty |
| 3 | 137 | 0.52 | 0.80 | 21 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 1ZBP · X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87HD3
- Elsewhere: RCSB PDB 1ZBP · PDBe 1ZBP · UniProt Q87HD3
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