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Solution structure of biv tar hairpin complexed to jdv tat arginine- rich motif

Analyse Solution structure of biv tar hairpin complexed to jdv tat arginine- rich motif in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1ZBN
Type: protein + RNA
Length: 45 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Biv mRNA; Jdv tat protein
Pockets: 1 · best druggability 0.43

Structure

solution nmr · 2 distinct chains · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Biv mRNA	rna	28	—	—
B	Jdv tat protein	protein	17	0% helix, 0% strand	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	73	0.43	0.82	12	empty

Interfaces

1 interface between chains.

A–B · 1098 Å² buried · 52 hydrogen bonds · protein-nucleic

Compared structures

1ZBN · Solution structure of BIV TAR hairpin complexed to JDV Tat arginine-rich motif · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1ZBN · PDBe 1ZBN

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