Research workbench
Foot-and mouth disease virus serotype A1061
Analyse Foot-and mouth disease virus serotype A1061 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZBE
- Type
- protein
- Length
- 668 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coat protein VP1; Coat protein VP2; Coat protein VP3; Coat protein VP4
- UniProt
- P03306
- Pockets
- 8 · best druggability 0.78
Structure
x-ray diffraction · 4 distinct chains · 12% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | Coat protein VP1 | protein | 191 | 15% helix, 30% strand | P03306 |
| 2 | Coat protein VP2 | protein | 207 | 11% helix, 45% strand | P03306 |
| 3 | Coat protein VP3 | protein | 221 | 8% helix, 33% strand | P03306 |
| 4 | Coat protein VP4 | protein | 49 | 22% helix, 2% strand | P03306 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 713 | 0.78 | 0.83 | 71 | empty |
| 2 | 868 | 0.72 | 0.77 | 68 | empty |
| 3 | 564 | 0.68 | 0.78 | 52 | empty |
| 4 | 187 | 0.50 | 0.77 | 26 | empty |
| 5 | 158 | 0.47 | 0.76 | 21 | empty |
Interfaces
6 interfaces between chains.
- 1–2 · 1434 Ų buried · 22 hydrogen bonds · protein-protein
- 1–3 · 1124 Ų buried · 19 hydrogen bonds · protein-protein
- 2–3 · 850 Ų buried · 11 hydrogen bonds · protein-protein
- 1–4 · 777 Ų buried · 14 hydrogen bonds · protein-protein
- 2–4 · 233 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 1ZBE · Foot-and Mouth Disease Virus Serotype A1061 · the same entry in another collection · chain 1 against 1, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03306
- Elsewhere: RCSB PDB 1ZBE · PDBe 1ZBE · UniProt P03306
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