Research workbench
Ribosomal protein L10-L12(NTD) complex, space group P212121, form B
Analyse Ribosomal protein L10-L12(NTD) complex, space group P212121, form B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1ZAX
- Type
- protein
- Length
- 351 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 50S ribosomal protein L10; 50S ribosomal protein L7/L12
- UniProt
- P29394, P29396
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 4 distinct chains · 67% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 50S ribosomal protein L10 | protein | 174 | 61% helix, 14% strand | P29394 |
| U, V, W | 50S ribosomal protein L7/L12 | protein | 30 | 80% helix, 3% strand | P29396 |
| X, Y | 50S ribosomal protein L7/L12 | protein | 29 | 79% helix, 3% strand | P29396 |
| Z | 50S ribosomal protein L7/L12 | protein | 29 | 76% helix, 3% strand | P29396 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.35 | 0.77 | 14 | empty |
Interfaces
15 interfaces between chains.
- W–X · 823 Ų buried · 2 hydrogen bonds · protein-protein
- U–V · 818 Ų buried · 3 hydrogen bonds · protein-protein
- Y–Z · 726 Ų buried · 4 hydrogen bonds · protein-protein
- A–V · 610 Ų buried · 2 hydrogen bonds · protein-protein
- A–Y · 411 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1ZAX · Ribosomal Protein L10-L12(NTD) Complex, Space Group P212121, Form B · the same entry in another collection · chain Z against Z, TM-score 1.00
- P29394 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L10 (P29394) · a predicted model of the same protein · chain A against A, TM-score 0.90
- P29396 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L7/L12 (P29396) · a predicted model of the same protein · chain X against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29394
- Every structure of UniProt P29396
- Elsewhere: RCSB PDB 1ZAX · PDBe 1ZAX · UniProt P29394 · UniProt P29396
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.