Research workbench
X-ray structure of gene product from arabidopsis thaliana AT3G03250, a putative udp-glucose pyrophosphorylase
Analyse X-ray structure of gene product from arabidopsis thaliana AT3G03250, a putative… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z90
- Type
- protein
- Length
- 915 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AT3G03250 protein
- UniProt
- Q9M9P3
- Pockets
- 10 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AT3G03250 protein | protein | 460 | 33% helix, 28% strand | Q9M9P3 |
| B | AT3G03250 protein | protein | 455 | 34% helix, 29% strand | Q9M9P3 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 773 | 0.68 | 0.75 | 74 | empty |
| 2 | 167 | 0.65 | 0.86 | 26 | empty |
| 3 | 531 | 0.63 | 0.76 | 56 | empty |
| 4 | 151 | 0.61 | 0.85 | 21 | empty |
| 5 | 226 | 0.51 | 0.76 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 89 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1Z90 · X-ray structure of gene product from arabidopsis thaliana at3g03250, a putative… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9M9P3 · AlphaFold monomer V2.0 prediction for UTP--glucose-1-phosphate uridylyltransferase 2… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9M9P3
- Elsewhere: RCSB PDB 1Z90 · PDBe 1Z90 · UniProt Q9M9P3
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