Research workbench
2A cysteine proteinase from human coxsackievirus B4 (strain jvb / benschoten / new york / 51)
Analyse 2A cysteine proteinase from human coxsackievirus B4 (strain jvb / benschoten /… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z8R
- Type
- protein
- Length
- 150 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coxsackievirus B4 polyprotein
- EC
- 3.4.22.29
- UniProt
- P08292
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.49
Structure
solution nmr · 1 distinct chain · 5% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Coxsackievirus B4 polyprotein (EC 3.4.22.29) | protein | 150 | 5% helix, 44% strand | P08292 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.49 | 0.83 | 21 | empty |
Compared structures
- 1Z8R · 2A cysteine proteinase from human coxsackievirus B4 (strain JVB / Benschoten / New York /… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08292
- Elsewhere: RCSB PDB 1Z8R · PDBe 1Z8R · UniProt P08292
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