Research workbench
Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsdna
Analyse Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsdna in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z63
- Type
- protein + DNA
- Length
- 1,014 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*AP*AP*AP*AP*AP*A*AP*TP*TP*GP*CP*CP*GP*AP*AP*GP*AP*CP* GP*AP*AP*AP*AP*AP*A)-3'…
- UniProt
- Q97XQ5
- Pockets
- 12 · best druggability 0.81
Structure
x-ray diffraction · 3 distinct chains · 44% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, E | 5'-D(*AP*AP*AP*AP*AP*A*AP*TP*TP*GP*CP*CP*GP*AP*AP*GP*AP*CP* GP*AP*AP*AP*AP*AP*A)-3' | dna | 19 | — | — |
| D, F | 5'-D(*TP*TP*TP*TP*TP*TP*TP*CP*GP*TP*CP*TP*TP*CP*GP*GP*CP*AP *AP*TP*TP*TP*TP*TP*T)-3' | dna | 20 | — | — |
| A, B | Helicase of the SNF2/RAD54 family | protein | 468 | 44% helix, 13% strand | Q97XQ5 |
Pockets
12 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 816 | 0.81 | 0.84 | 65 | empty |
| 2 | 810 | 0.80 | 0.84 | 64 | empty |
| 3 | 429 | 0.68 | 0.80 | 34 | empty |
| 4 | 405 | 0.67 | 0.80 | 32 | empty |
| 5 | 126 | 0.65 | 0.88 | 27 | empty |
Interfaces
7 interfaces between chains.
- E–F · 845 Ų buried · 74 hydrogen bonds · nucleic-nucleic
- C–D · 807 Ų buried · 69 hydrogen bonds · nucleic-nucleic
- A–B · 388 Ų buried · 8 hydrogen bonds · protein-protein
- E–B · 334 Ų buried · 6 hydrogen bonds · protein-nucleic
- C–A · 331 Ų buried · 5 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 20 modified (engineered).
Compared structures
- 1Z63 · Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97XQ5
- Elsewhere: RCSB PDB 1Z63 · PDBe 1Z63 · UniProt Q97XQ5
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