Research workbench
Ferritin from T. maritima
Analyse Ferritin from T. maritima in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z4A
- Type
- protein
- Length
- 1,312 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin
- UniProt
- Q9X0L2
- Ligands
- LFA
- Pockets
- 20 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Ferritin | protein | 164 | 77% helix, 1% strand | Q9X0L2 |
Ligands and binding sites
- LFA · Eicosane · ligand · 4 copies · chains A, D, B, C, F, G, E, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 464 | 0.76 | 0.84 | 36 | empty |
| 2 | 266 | 0.74 | 0.87 | 27 | LFA |
| 3 | 270 | 0.72 | 0.85 | 31 | LFA |
| 4 | 271 | 0.71 | 0.85 | 31 | LFA |
| 5 | 290 | 0.70 | 0.84 | 33 | LFA |
Interfaces
12 interfaces between chains.
- A–D · 1247 Ų buried · 23 hydrogen bonds · protein-protein
- F–G · 1239 Ų buried · 23 hydrogen bonds · protein-protein
- B–C · 1226 Ų buried · 25 hydrogen bonds · protein-protein
- E–H · 1226 Ų buried · 27 hydrogen bonds · protein-protein
- D–E · 541 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 1Z4A · Ferritin from T. maritima · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X0L2
- Elsewhere: RCSB PDB 1Z4A · PDBe 1Z4A · UniProt Q9X0L2
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