Research workbench
Crystal structure of 7S.S srp RNA of M. jannaschii
Analyse Crystal structure of 7S.S srp RNA of M. jannaschii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z43
- Type
- RNA
- Length
- 101 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (101-mer)
- Pockets
- 6 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA (101-mer) | rna | 101 | — | — |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 600 | 0.59 | 0.73 | 30 | empty |
| 2 | 198 | 0.46 | 0.76 | 21 | empty |
| 3 | 147 | 0.45 | 0.77 | 10 | empty |
| 4 | 241 | 0.44 | 0.73 | 19 | empty |
| 5 | 82 | 0.35 | 0.76 | 13 | empty |
Compared structures
- 1Z43 · Crystal structure of 7S.S SRP RNA of M. jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1Z43 · PDBe 1Z43
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