Research workbench
Inositol 1,3,4-trisphosphate 5/6-kinase complexed MG2+/ADP
Analyse Inositol 1,3,4-trisphosphate 5/6-kinase complexed MG2+/ADP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z2N
- Type
- protein
- Length
- 311 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Inositol 1,3,4-trisphosphate 5/6-kinase
- UniProt
- Q9XYQ1
- Ligands
- ADP, MG
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Inositol 1,3,4-trisphosphate 5/6-kinase | protein | 311 | 31% helix, 28% strand | Q9XYQ1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 540 | 0.74 | 0.82 | 57 | MG, ADP |
| 2 | 63 | 0.33 | 0.76 | 18 | empty |
Compared structures
- 1Z2N · Inositol 1,3,4-trisphosphate 5/6-kinase complexed Mg2+/ADP · the same entry in another collection · chain X against X, TM-score 1.00
- Q9XYQ1 · AlphaFold monomer V2.0 prediction for inositol-tetrakisphosphate 1-kinase (Q9XYQ1) · a predicted model of the same protein · chain X against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9XYQ1
- Elsewhere: RCSB PDB 1Z2N · PDBe 1Z2N · UniProt Q9XYQ1
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