Research workbench
Crystal structures of the tricorn interacting facor F3 from thermoplasma acidophilum, a zinc aminopeptidase in three different conformations
Analyse Crystal structures of the tricorn interacting facor F3 from thermoplasma… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z1W
- Type
- protein
- Length
- 780 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tricorn protease interacting factor F3
- EC
- 3.4.11.-
- UniProt
- O93655
- Ligands
- ZN, SO4
- Pockets
- 8 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tricorn protease interacting factor F3 (EC 3.4.11.-) | protein | 780 | 44% helix, 22% strand | O93655 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 340 | 0.75 | 0.86 | 35 | empty |
| 2 | 691 | 0.74 | 0.80 | 63 | empty |
| 3 | 300 | 0.63 | 0.80 | 40 | empty |
| 4 | 101 | 0.41 | 0.77 | 22 | empty |
| 5 | 89 | 0.40 | 0.78 | 17 | empty |
Compared structures
- 1Z1W · Crystal structures of the tricorn interacting facor F3 from Thermoplasma acidophilum, a… · the same entry in another collection · chain A against A, TM-score 1.00
- O93655 · AlphaFold monomer V2.0 prediction for tricorn protease-interacting factor F3 (O93655) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O93655
- Elsewhere: RCSB PDB 1Z1W · PDBe 1Z1W · UniProt O93655
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