Research workbench
Structural determinants of tissue tropism and in vivo pathogenicity for the parvovirus minute virus of mice
Analyse Structural determinants of tissue tropism and in vivo pathogenicity for the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Z14
- Type
- protein
- Length
- 549 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP2
- UniProt
- Q84367
- Pockets
- 12 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP2 | protein | 549 | 9% helix, 30% strand | Q84367 |
Pockets
12 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.66 | 0.96 | 15 | empty |
| 2 | 417 | 0.58 | 0.75 | 43 | empty |
| 3 | 228 | 0.56 | 0.78 | 30 | empty |
| 4 | 94 | 0.48 | 0.81 | 21 | empty |
| 5 | 155 | 0.45 | 0.75 | 29 | empty |
Compared structures
- 1Z14 · Structural Determinants of Tissue Tropism and In Vivo Pathogenicity for the Parvovirus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84367
- Elsewhere: RCSB PDB 1Z14 · PDBe 1Z14 · UniProt Q84367
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