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Apo-cellular retinoic acid binding protein I

Analyse Apo-cellular retinoic acid binding protein I in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1CBI
Type: protein
Length: 272 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cellular retinoic acid binding protein I
UniProt: P62965
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Cellular retinoic acid binding protein I	protein	136	13% helix, 57% strand	P62965

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	266	0.82	0.94	40	empty
2	585	0.76	0.82	49	empty

Interfaces

1 interface between chains.

A–B · 560 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

1CBI · Apo-cellular retinoic acid binding protein I · the same entry in another collection · chain A against A, TM-score 1.00
P62965 · AlphaFold monomer V2.0 prediction for cellular retinoic acid-binding protein 1 (P62965) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P62965
Elsewhere: RCSB PDB 1CBI · PDBe 1CBI · UniProt P62965

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