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The crystal structure of a cyanogenic beta-glucosidase from white clover (trifolium repens L.), a family 1 glycosyl-hydrolase

Analyse The crystal structure of a cyanogenic beta-glucosidase from white clover… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1CBG
Type: protein
Length: 490 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cyanogenic beta-glucosidase
EC: 3.2.1.21
UniProt: P26205
Pockets: 4 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cyanogenic beta-glucosidase (EC 3.2.1.21)	protein	490	44% helix, 17% strand	P26205

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	458	0.73	0.82	45	empty
2	114	0.41	0.76	24	empty
3	109	0.38	0.75	15	empty
4	72	0.35	0.76	16	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1CBG · The crystal structure of a cyanogenic beta-glucosidase from white clover (trifolium… · the same entry in another collection · chain A against A, TM-score 1.00
P26205 · AlphaFold monomer V2.0 prediction for cyanogenic beta-glucosidase (P26205) · a predicted model of the same protein · chain A against A, TM-score 0.83

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P26205
Elsewhere: RCSB PDB 1CBG · PDBe 1CBG · UniProt P26205

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