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Local interactions drive the formation of non-native structure in the denatured state of human alpha-lactalbumin: a high resolution structural characterization of a peptide model in aqueous solution

Analyse Local interactions drive the formation of non-native structure in the denatured… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1CB3
Type
protein
Length
11 residues
Chains
1
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Lca
UniProt
P00709
Ligands
ACE, NH2

Structure

solution nmr · 1 distinct chain · 36% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ALcaprotein1136% helix, 0% strandP00709

Ligands and binding sites

  • ACE · Acetyl group · ligand · chains A
  • NH2 · Amino group · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

  • 1CB3 · Local interactions drive the formation of non-native structure in the denatured state of… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00709 · AlphaFold monomer V2.0 prediction for alpha-lactalbumin (P00709) · a predicted model of the same protein · chain A against A, TM-score 0.30

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