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Crystal structure of anaerobiospirillum succiniciproducens phosphoenolpyruvate carboxykinase

Analyse Crystal structure of anaerobiospirillum succiniciproducens phosphoenolpyruvate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YVY
Type: protein
Length: 1,011 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoenolpyruvate carboxykinase [ATP]
EC: 4.1.1.49
UniProt: O09460
Pockets: 4 · best druggability 0.67

Structure

x-ray diffraction · 2 distinct chains · 29% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	protein	507	30% helix, 22% strand	O09460
B	Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)	protein	504	28% helix, 24% strand	O09460

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	482	0.67	0.79	55	empty
2	474	0.67	0.79	51	empty
3	97	0.40	0.76	18	empty
4	67	0.34	0.76	19	empty

Compared structures

1YVY · Crystal structure of Anaerobiospirillum succiniciproducens phosphoenolpyruvate… · the same entry in another collection · chain A against A, TM-score 1.00
O09460 · AlphaFold monomer V2.0 prediction for phosphoenolpyruvate carboxykinase (ATP) (O09460) · a predicted model of the same protein · chain A against A, TM-score 0.96

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Every structure of UniProt O09460
Elsewhere: RCSB PDB 1YVY · PDBe 1YVY · UniProt O09460

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