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Ro autoantigen

Analyse Ro autoantigen in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YVR
Type: protein
Length: 520 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 60-kda ss-A/RO ribonucleoprotein
UniProt: P42700
Pockets: 2 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	60-kda ss-A/RO ribonucleoprotein	protein	520	54% helix, 8% strand	P42700

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	934	0.71	0.76	94	empty
2	112	0.40	0.75	17	empty

Compared structures

1YVR · Ro autoantigen · the same entry in another collection · chain A against A, TM-score 1.00
P42700 · AlphaFold monomer V2.0 prediction for 60 kda ss-A/RO ribonucleoprotein (P42700) · a predicted model of the same protein · chain A against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P42700
Elsewhere: RCSB PDB 1YVR · PDBe 1YVR · UniProt P42700

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