Research workbench
X-ray structure of putative histidine-containing phosphotransfer protein from rice, AK104879
Analyse X-ray structure of putative histidine-containing phosphotransfer protein from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YVI
- Type
- protein
- Length
- 276 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histidine-containing phosphotransfer protein
- UniProt
- Q6VAK4
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histidine-containing phosphotransfer protein | protein | 140 | 84% helix, 0% strand | Q6VAK4 |
| B | Histidine-containing phosphotransfer protein | protein | 136 | 83% helix, 0% strand | Q6VAK4 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.74 | 0.94 | 26 | empty |
| 2 | 70 | 0.28 | 0.72 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1070 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 1YVI · X-ray structure of putative histidine-containing phosphotransfer protein from rice… · the same entry in another collection · chain A against A, TM-score 1.00
- Q6VAK4 · AlphaFold monomer V2.0 prediction for histidine-containing phosphotransfer protein 2… · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6VAK4
- Elsewhere: RCSB PDB 1YVI · PDBe 1YVI · UniProt Q6VAK4
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