Research workbench

Determination of three crystal structures of canavalin by molecular replacement

Analyse Determination of three crystal structures of canavalin by molecular replacement in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1CAU
Type: protein
Length: 365 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Canavalin
UniProt: P50477
Pockets: 3 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 12% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Canavalin	protein	181	11% helix, 43% strand	P50477
B	Canavalin	protein	184	14% helix, 39% strand	P50477

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	129	0.60	0.85	26	empty
2	169	0.53	0.79	26	empty
3	64	0.34	0.77	17	empty

Interfaces

1 interface between chains.

A–B · 1574 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

1CAU · Determination of three crystal structures of canavalin by molecular replacement · the same entry in another collection · chain A against A, TM-score 1.00
P50477 · AlphaFold monomer V2.0 prediction for canavalin (P50477) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P50477
Elsewhere: RCSB PDB 1CAU · PDBe 1CAU · UniProt P50477

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.