Research workbench
Bacteriophage T4 capsid vertex protein GP24
Analyse Bacteriophage T4 capsid vertex protein GP24 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YUE
- Type
- protein
- Length
- 390 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Head vertex protein GP24
- UniProt
- P19896
- Pockets
- 4 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Head vertex protein GP24 | protein | 390 | 26% helix, 27% strand | P19896 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.56 | 0.87 | 23 | empty |
| 2 | 80 | 0.41 | 0.79 | 14 | empty |
| 3 | 107 | 0.34 | 0.73 | 22 | empty |
| 4 | 58 | 0.29 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 1YUE · Bacteriophage T4 capsid vertex protein gp24 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19896
- Elsewhere: RCSB PDB 1YUE · PDBe 1YUE · UniProt P19896
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