Research workbench

Solution structure of an rRNA methyltransferase (ermam) that confers macrolide-lincosamide-streptogramin antibiotic resistance, NMR, minimized average structure

Analyse Solution structure of an rRNA methyltransferase (ermam) that confers… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YUB
Type: protein
Length: 245 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RRNA methyltransferase
EC: 2.1.1.48
UniProt: P21236
Pockets: 1 · best druggability 0.67

Structure

solution nmr · 1 distinct chain · 31% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RRNA methyltransferase (EC 2.1.1.48)	protein	245	31% helix, 18% strand	P21236

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	282	0.67	0.82	30	empty

Compared structures

1YUB · Solution structure of an rRNA methyltransferase (ermam) that confers… · the same entry in another collection · chain A against A, TM-score 1.00
P21236 · AlphaFold monomer V2.0 prediction for rRNA adenine N-6-methyltransferase (P21236) · a predicted model of the same protein · chain A against A, TM-score 0.73

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P21236
Elsewhere: RCSB PDB 1YUB · PDBe 1YUB · UniProt P21236

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.