Research workbench
SIV protease crystallized with peptide product
Analyse SIV protease crystallized with peptide product in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YTI
- Type
- protein
- Length
- 103 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SIV protease; Peptide product
- EC
- 3.4.23.16
- UniProt
- P05896
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SIV protease (EC 3.4.23.16) | protein | 99 | 6% helix, 47% strand | P05896 |
| I | Peptide product | protein | 4 | 0% helix, 50% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.41 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–I · 413 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 1YTI · SIV protease crystallized with peptide product · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05896
- Elsewhere: RCSB PDB 1YTI · PDBe 1YTI · UniProt P05896
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