Research workbench
Thermodynamic cycles as probes of structure-function relationships in unfolded proteins
Analyse Thermodynamic cycles as probes of structure-function relationships in unfolded… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YTC
- Type
- protein
- Length
- 112 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yeast iso-2 cytochrome C
- UniProt
- P00045
- Ligands
- HEC, SO4
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yeast iso-2 cytochrome C | protein | 112 | 42% helix, 2% strand | P00045 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 207 | 0.76 | 0.90 | 34 | HEC |
Modifications
Observed in the structure: 2 cofactor, 1 modified (heme c attachment, methylation).
Compared structures
- 1YTC · Thermodynamic cycles as probes of structure-function relationships in unfolded proteins · the same entry in another collection · chain A against A, TM-score 1.00
- P00045 · AlphaFold monomer V2.0 prediction for cytochrome C isoform 2 (P00045) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00045
- Elsewhere: RCSB PDB 1YTC · PDBe 1YTC · UniProt P00045
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