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Novel ubiquitin-conjugating enzyme

Analyse Novel ubiquitin-conjugating enzyme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YRV
Type: protein
Length: 153 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin-conjugating ligase MGC351130
EC: 6.3.2.19
UniProt: Q5VVX9
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin-conjugating ligase MGC351130 (EC 6.3.2.19)	protein	153	37% helix, 18% strand	Q5VVX9

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	94	0.50	0.82	16	empty

Compared structures

1YRV · Novel Ubiquitin-Conjugating Enzyme · the same entry in another collection · chain A against A, TM-score 1.00
Q5VVX9 · AlphaFold monomer V2.0 prediction for ubiquitin-conjugating enzyme E2 U (Q5VVX9) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5VVX9
Elsewhere: RCSB PDB 1YRV · PDBe 1YRV · UniProt Q5VVX9

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