Research workbench
Hypothetical protein from leishmania major unknown function sequence homologue to human P32 protein
Analyse Hypothetical protein from leishmania major unknown function sequence homologue… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YQF
- Type
- protein
- Length
- 1,083 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein LMAJ011689
- UniProt
- Q4Q7K6
- Pockets
- 16 · best druggability 0.75
Structure
x-ray diffraction · 4 distinct chains · 41% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D, F | Hypothetical protein LMAJ011689 | protein | 182 | 42% helix, 26% strand | Q4Q7K6 |
| B | Hypothetical protein LMAJ011689 | protein | 177 | 41% helix, 25% strand | Q4Q7K6 |
| C | Hypothetical protein LMAJ011689 | protein | 181 | 41% helix, 25% strand | Q4Q7K6 |
| E | Hypothetical protein LMAJ011689 | protein | 179 | 41% helix, 25% strand | Q4Q7K6 |
Pockets
16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1020 | 0.75 | 0.78 | 91 | empty |
| 2 | 367 | 0.61 | 0.78 | 48 | empty |
| 3 | 339 | 0.60 | 0.78 | 42 | empty |
| 4 | 293 | 0.58 | 0.78 | 37 | empty |
| 5 | 278 | 0.56 | 0.77 | 34 | empty |
Interfaces
9 interfaces between chains.
- B–C · 1386 Ų buried · 18 hydrogen bonds · protein-protein
- D–F · 1378 Ų buried · 12 hydrogen bonds · protein-protein
- A–C · 1359 Ų buried · 13 hydrogen bonds · protein-protein
- D–E · 1339 Ų buried · 17 hydrogen bonds · protein-protein
- A–B · 1331 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 1YQF · Hypothetical protein from leishmania major unknown function sequence homologue to human… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4Q7K6
- Elsewhere: RCSB PDB 1YQF · PDBe 1YQF · UniProt Q4Q7K6
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