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C69A flavodoxin II from azotobacter vinelandii

Analyse C69A flavodoxin II from azotobacter vinelandii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YOB
Type: protein
Length: 358 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flavodoxin 2
UniProt: P00324
Ligands: FMN, SO4
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Flavodoxin 2	protein	179	33% helix, 18% strand	P00324

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
SO4 · Sulfate ion · ion · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	115	0.52	0.82	22	FMN
2	100	0.50	0.82	23	FMN

Compared structures

1YOB · C69A Flavodoxin II from Azotobacter vinelandii · the same entry in another collection · chain A against A, TM-score 1.00
P00324 · AlphaFold monomer V2.0 prediction for flavodoxin 2 (P00324) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00324
Elsewhere: RCSB PDB 1YOB · PDBe 1YOB · UniProt P00324

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