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Had superfamily phosphotransferase substrate diversification: structure and function analysis of the had subclass iib sugar phosphatase BT4131

Analyse Had superfamily phosphotransferase substrate diversification: structure and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YMQ
Type: protein
Length: 260 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sugar-phosphate phosphatase BT4131
UniProt: Q8A090
Ligands: MG, SO4
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sugar-phosphate phosphatase BT4131	protein	260	39% helix, 21% strand	Q8A090

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	155	0.65	0.86	36	MG, SO4

Compared structures

1YMQ · HAD Superfamily Phosphotransferase Substrate Diversification: Structure and Function… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8A090
Elsewhere: RCSB PDB 1YMQ · PDBe 1YMQ · UniProt Q8A090

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