Research workbench
Crystal structure of YHI9, the yeast member of the phenazine biosynthesis phzf enzyme superfamily.
Analyse Crystal structure of YHI9, the yeast member of the phenazine biosynthesis phzf… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YM5
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical 32.6 kda protein in DAP2-SLT2 intergenic region
- UniProt
- P38765
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical 32.6 kda protein in DAP2-SLT2 intergenic region | protein | 294 | 26% helix, 39% strand | P38765 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 342 | 0.61 | 0.78 | 39 | empty |
Compared structures
- 1YM5 · Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme… · the same entry in another collection · chain A against A, TM-score 1.00
- P38765 · AlphaFold monomer V2.0 prediction for uncharacterized isomerase YHI9 (P38765) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38765
- Elsewhere: RCSB PDB 1YM5 · PDBe 1YM5 · UniProt P38765
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