Research workbench
Crystal structure of the conserved protein of unknown function PA5104 from pseudomonas aeruginosa PAO1
Analyse Crystal structure of the conserved protein of unknown function PA5104 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YLL
- Type
- protein
- Length
- 768 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved hypothetical protein
- UniProt
- Q9HU79
- Pockets
- 9 · best druggability 0.77
Structure
x-ray diffraction · 4 distinct chains · 2% helix, 62% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Conserved hypothetical protein | protein | 190 | 3% helix, 63% strand | Q9HU79 |
| B | Conserved hypothetical protein | protein | 189 | 2% helix, 62% strand | Q9HU79 |
| C | Conserved hypothetical protein | protein | 194 | 2% helix, 62% strand | Q9HU79 |
| D | Conserved hypothetical protein | protein | 195 | 3% helix, 61% strand | Q9HU79 |
Pockets
9 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 96 | 0.77 | 0.98 | 18 | empty |
| 2 | 76 | 0.74 | 0.98 | 18 | empty |
| 3 | 685 | 0.72 | 0.79 | 66 | empty |
| 4 | 615 | 0.70 | 0.78 | 72 | empty |
| 5 | 149 | 0.58 | 0.83 | 25 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1021 Ų buried · 25 hydrogen bonds · protein-protein
- C–D · 1005 Ų buried · 22 hydrogen bonds · protein-protein
- A–D · 107 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 106 Ų buried · 1 hydrogen bond · protein-protein
- B–D · 70 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 1YLL · Crystal Structure of the Conserved Protein of Unknown Function PA5104 from Pseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HU79
- Elsewhere: RCSB PDB 1YLL · PDBe 1YLL · UniProt Q9HU79
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