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Crystal structure of yellow fever virus NS3 helicase
Analyse Crystal structure of yellow fever virus NS3 helicase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YKS
- Type
- protein
- Length
- 431 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]
- EC
- 3.4.21.91
- UniProt
- P19901
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit] (EC 3.4.21.91) | protein | 431 | 31% helix, 19% strand | P19901 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 961 | 0.78 | 0.80 | 95 | empty |
| 2 | 170 | 0.59 | 0.83 | 38 | empty |
| 3 | 56 | 0.31 | 0.76 | 16 | empty |
Compared structures
- 1YKS · Crystal structure of yellow fever virus NS3 helicase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19901
- Elsewhere: RCSB PDB 1YKS · PDBe 1YKS · UniProt P19901
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