Research workbench
Crystal structure of the rngfi-B ligand-binding domain
Analyse Crystal structure of the rngfi-B ligand-binding domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YJE
- Type
- protein
- Length
- 226 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orphan nuclear receptor NR4A1
- UniProt
- P22829
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 67% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orphan nuclear receptor NR4A1 | protein | 226 | 67% helix, 4% strand | P22829 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.38 | 0.77 | 14 | empty |
| 2 | 76 | 0.36 | 0.76 | 13 | empty |
Compared structures
- 1YJE · Crystal structure of the rNGFI-B ligand-binding domain · the same entry in another collection · chain A against A, TM-score 1.00
- P22829 · AlphaFold monomer V2.0 prediction for nuclear receptor subfamily 4 group a member 1… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22829
- Elsewhere: RCSB PDB 1YJE · PDBe 1YJE · UniProt P22829
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