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Solution structure of CA2+-free ddcad-1

Analyse Solution structure of CA2+-free ddcad-1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YHP
Type: protein
Length: 212 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Calcium-dependent cell adhesion molecule-1
UniProt: P54657
Pockets: 1 · best druggability 0.51

Structure

solution nmr · 1 distinct chain · 3% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Calcium-dependent cell adhesion molecule-1	protein	212	3% helix, 46% strand	P54657

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.51	0.84	19	empty

Compared structures

1YHP · Solution Structure of Ca2+-free DdCAD-1 · the same entry in another collection · chain A against A, TM-score 1.00
P54657 · AlphaFold monomer V2.0 prediction for calcium-dependent cell adhesion molecule 1 (P54657) · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54657
Elsewhere: RCSB PDB 1YHP · PDBe 1YHP · UniProt P54657

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