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Crystal structures of Y41H and Y41F mutants of gene V protein from ff phage suggest possible protein-protein interactions in gvp-ssdna complex
Analyse Crystal structures of Y41H and Y41F mutants of gene V protein from ff phage… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YHA
- Type
- protein
- Length
- 174 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gene V protein
- UniProt
- P69543
- Pockets
- 2 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Gene V protein | protein | 87 | 7% helix, 38% strand | P69543 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.37 | 0.79 | 14 | empty |
| 2 | 60 | 0.35 | 0.78 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 858 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 1YHA · Crystal structures of Y41H and Y41F mutants of gene V protein from ff phage suggest… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P69543
- Elsewhere: RCSB PDB 1YHA · PDBe 1YHA · UniProt P69543
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