Research workbench
Crystal structure of saccharomyces cerevisiae YN9A protein, new york structural genomics consortium
Analyse Crystal structure of saccharomyces cerevisiae YN9A protein, new york structural… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YGA
- Type
- protein
- Length
- 672 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical 37.9 kda protein in BIO3-HXT17 intergenic region
- EC
- 5.1.3.3
- UniProt
- P53757
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical 37.9 kda protein in BIO3-HXT17 intergenic region (EC 5.1.3.3) | protein | 336 | 7% helix, 45% strand | P53757 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1137 | 0.77 | 0.80 | 94 | empty |
| 2 | 106 | 0.42 | 0.77 | 21 | empty |
| 3 | 90 | 0.40 | 0.78 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 572 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1YGA · CRYSTAL STRUCTURE OF Saccharomyces cerevisiae YN9A PROTEIN, NEW YORK STRUCTURAL GENOMICS… · the same entry in another collection · chain A against A, TM-score 1.00
- P53757 · AlphaFold monomer V2.0 prediction for uncharacterized isomerase YNR071C (P53757) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53757
- Elsewhere: RCSB PDB 1YGA · PDBe 1YGA · UniProt P53757
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