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Solution structure of the scylv P1-P2 frameshifting pseudoknot, 20 lowest energy structures

Analyse Solution structure of the scylv P1-P2 frameshifting pseudoknot, 20 lowest… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1YG3
Type: RNA
Length: 28 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Scylv RNA pseudoknot
Pockets: 1 · best druggability 0.26

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Scylv RNA pseudoknot	rna	28	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.26	0.74	11	empty

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

1YG3 · Solution Structure of the ScYLV P1-P2 Frameshifting Pseudoknot, 20 Lowest Energy… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1YG3 · PDBe 1YG3

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