Research workbench
Solution NMR structure of AT5G01610, an arabidopsis thaliana protein containing DUF538 domain
Analyse Solution NMR structure of AT5G01610, an arabidopsis thaliana protein containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YDU
- Type
- protein
- Length
- 170 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AT5G01610
- UniProt
- Q9M015
- Pockets
- 2 · best druggability 0.74
Structure
solution nmr · 1 distinct chain · 6% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AT5G01610 | protein | 170 | 6% helix, 22% strand | Q9M015 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.74 | 0.97 | 24 | empty |
| 2 | 278 | 0.54 | 0.76 | 37 | empty |
Compared structures
- 1YDU · Solution NMR structure of At5g01610, an Arabidopsis thaliana protein containing DUF538… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9M015 · AlphaFold monomer V2.0 prediction for uncharacterized protein AT5G01610 (Q9M015) · a predicted model of the same protein · chain A against A, TM-score 0.49
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9M015
- Elsewhere: RCSB PDB 1YDU · PDBe 1YDU · UniProt Q9M015
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