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Crystallographic structure of the T=1 particle of brome mosaic virus
Analyse Crystallographic structure of the T=1 particle of brome mosaic virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YC6
- Type
- protein
- Length
- 4,620 residues
- Chains
- 30
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coat protein
- UniProt
- P03602
- Pockets
- 20 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2, 3, 4 | Coat protein | protein | 154 | 9% helix, 39% strand | P03602 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 697 | 0.85 | 0.89 | 65 | empty |
| 2 | 1137 | 0.85 | 0.85 | 110 | empty |
| 3 | 579 | 0.84 | 0.89 | 59 | empty |
| 4 | 385 | 0.84 | 0.92 | 35 | empty |
| 5 | 778 | 0.84 | 0.86 | 64 | empty |
Interfaces
101 interfaces between chains.
- R–U · 1800 Ų buried · 20 hydrogen bonds · protein-protein
- W–2 · 1734 Ų buried · 20 hydrogen bonds · protein-protein
- O–4 · 1713 Ų buried · 21 hydrogen bonds · protein-protein
- B–Q · 1711 Ų buried · 22 hydrogen bonds · protein-protein
- A–V · 1699 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 1YC6 · Crystallographic Structure of the T=1 Particle of Brome Mosaic Virus · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03602
- Elsewhere: RCSB PDB 1YC6 · PDBe 1YC6 · UniProt P03602
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