Research workbench
NMR structure of the I-motif tetramer of D(AACCCC)
Analyse NMR structure of the I-motif tetramer of D(AACCCC) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YBL
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*AP*AP*CP*CP*CP*C)-3'
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | 5'-D(*AP*AP*CP*CP*CP*C)-3' | dna | 6 | — | — |
Interfaces
6 interfaces between chains.
- B–D · 449 Ų buried · 32 hydrogen bonds · nucleic-nucleic
- A–C · 431 Ų buried · 32 hydrogen bonds · nucleic-nucleic
- A–D · 383 Ų buried · 23 hydrogen bonds · nucleic-nucleic
- B–C · 379 Ų buried · 21 hydrogen bonds · nucleic-nucleic
- A–B · 346 Ų buried · 10 hydrogen bonds · nucleic-nucleic
Compared structures
- 1YBL · NMR structure of the i-motif tetramer of d(AACCCC) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1YBL · PDBe 1YBL
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