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Crystal structure of HA33A, a neurotoxin-associated protein from clostridium botulinum type a
Analyse Crystal structure of HA33A, a neurotoxin-associated protein from clostridium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1YBI
- Type
- protein
- Length
- 568 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-toxin haemagglutinin HA34
- UniProt
- Q45871
- Pockets
- 5 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Non-toxin haemagglutinin HA34 | protein | 284 | 11% helix, 49% strand | Q45871 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 346 | 0.58 | 0.76 | 58 | empty |
| 2 | 81 | 0.37 | 0.77 | 17 | empty |
| 3 | 61 | 0.34 | 0.77 | 13 | empty |
| 4 | 68 | 0.32 | 0.74 | 17 | empty |
| 5 | 72 | 0.30 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 448 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 1YBI · Crystal structure of HA33A, a neurotoxin-associated protein from Clostridium botulinum… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q45871
- Elsewhere: RCSB PDB 1YBI · PDBe 1YBI · UniProt Q45871
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